Homozygosity on chromosome 7 in CFS2 - CFS_fam3

max homozygosity score: 795
69 markers
48314947 bp chromosome 7 51944102 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
79574831494751944102#51954#52040regiongenotypes
narrow - use this when all patients are in the same family
79575104699651156489#52019#52023regiongenotypes
79575151921551835107#52036#52039regiongenotypes
79174871143749208360#51957#51973regiongenotypes
79175151576051519215#52033#52036regiongenotypes
78875152281951944102#52037#52040regiongenotypes
78174999898350381496#51995#51998regiongenotypes
78075020250650594329#51997#52010regiongenotypes
77275066408650851826#52014#52017regiongenotypes
71974987323849901427#51982#51985regiongenotypes
71274831494748711437#51954#51957regiongenotypes
71174980337549809742#51979#51981regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS_fam3change name
max_block_length500
max_score795
allele_frequenciescontrols
user_loginjncldwll1
lower_limit0
date2013-10-08 00:00:00
casesJC101,JC104,JC126,JC132,JC134,JC136,JC147,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores