Genome-wide homozygosity in V2FUll - v2

max homozygosity score: 240
52856 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
24035666987763870930#802460#803956regiongenotypes
24044483655949074467#794715#99550regiongenotypes
24055661832162360769#82081#817636regiongenotypes
24021389476692583#101126#82245regiongenotypes
240282699497839528421#89270#81147regiongenotypes
21351807503221056843#792480#792386regiongenotypes
211251758125618419568#88703#815881regiongenotypes
19492064567622367935#795723#96471regiongenotypes
narrow - use this when all patients are in the same family
24035666987763870930#802460#803956regiongenotypes
24044483655949074467#794715#99550regiongenotypes
24055661832162360769#82081#817636regiongenotypes
24021389476692583#101126#82245regiongenotypes
240282699497839528421#89270#81147regiongenotypes
21351807503221056843#792480#792386regiongenotypes
211251758125618419568#88703#815881regiongenotypes
19492064567622367935#795723#96471regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameV2FUllchange name
analysis_namev2change name
max_block_length80
max_score240
user_loginmominahmed72
homogeneity_requiredhomogeneity required
lower_limit0
date2018-03-28 00:00:00
exclusion_length250
casesZ1225.GT,Z1327.GT,Z1370.GT
controlsZ1111.GT,Z1121.GT,Z1123.GT,Z1125.GT


retrieve homozyosity scores