Homozygosity on chromosome 9 in IllBovGTFull - SNP50 CDA_copy

max homozygosity score: 240
36 markers
20645676 bp chromosome 9 22367935 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
19492064567622367935#795723#96471regiongenotypes
narrow - use this when all patients are in the same family
19492064567622367935#795723#96471regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameIllBovGTFullchange name
analysis_nameSNP50 CDA_copychange name
analysis_descriptionCase control
max_block_length80
max_score240
user_loginmominahmed72
homogeneity_requiredhomogeneity required
lower_limit0
date2018-03-28 00:00:00
exclusion_length250
casesZ1225.GT,Z1327.GT,Z1370.GT
controlsM13-07473/0002.GT,M13-07473/0003.GT,M13-07629/0001.GT,M13-11288/0001.GT,M13-11288/0002.GT,Z1111.GT,Z1121.GT,Z1122.GT,Z1123.GT,Z1125.GT,Z1141.GT,Z1142.GT,Z1266.GT,Z1356.GT,Z1357.GT,Z1366.GT,Z1371.GT,Z1372.GT,Z1448.GT,Z1449.GT,Z1451.GT,Z1452.GT,Z1453.GT,Z1454.GT,Z1455.GT,Z1456.GT,Z1457.GT,Z1555.GT,Z1556.GT,Z1557.GT,Z1558.GT,Z1559.GT,Z1560.GT,Z1561.GT,Z1562.GT,Z1563.GT,Z1564.GT,Z1565.GT,Z1566.GT,Z1567.GT,Z1568.GT,Z1569.GT,Z1570.GT,Z1574.GT,Z1577.GT


retrieve homozyosity scores