Genome-wide homozygosity in CFS2 - CFS2_fam

max homozygosity score: 268
41630 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
26874871143749208360#51957#51973regiongenotypes
24445775814558495503#45529#45542regiongenotypes
23033426786035084304#40452#40475regiongenotypes
22645850765558889420#45544#45554regiongenotypes
22575085575851944102#52018#52040regiongenotypes
22442755086828333817#44771#44788regiongenotypes
22242608268927117580#44741#44762regiongenotypes
2203118563902119456949#42578#42615regiongenotypes
22042081882221752975#44608#44633regiongenotypes
narrow - use this when all patients are in the same family
26874871143749208360#51957#51973regiongenotypes
24445776512358474633#45530#45539regiongenotypes
23033468915034703671#40467#40469regiongenotypes
23045839376858495503#45538#45542regiongenotypes
22933469807635084304#40468#40475regiongenotypes
22645870053658889420#45549#45554regiongenotypes
22575104699651156489#52019#52023regiongenotypes
22575151921551835107#52036#52039regiongenotypes
22442755086828333817#44771#44788regiongenotypes
22445865615358700536#45546#45549regiongenotypes
22242608268927117580#44741#44762regiongenotypes
22245850765558656153#45544#45546regiongenotypes
22175151576051519215#52033#52036regiongenotypes
2203118563902119456949#42578#42615regiongenotypes
22042081882221752975#44608#44633regiongenotypes
21875152281951944102#52037#52040regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS2_famchange name
max_block_length20
max_score268
user_loginjncldwll1
lower_limit0
date2013-07-23 00:00:00
casesJC101,JC104,JC126,JC132,JC134,JC136,JC147,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores