Homozygosity on chromosome 7 in CFS2 - CFS2_fam

max homozygosity score: 268
18 markers
50855758 bp chromosome 7 51944102 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
22575085575851944102#52018#52040regiongenotypes
narrow - use this when all patients are in the same family
22575104699651156489#52019#52023regiongenotypes
22575151921551835107#52036#52039regiongenotypes
22175151576051519215#52033#52036regiongenotypes
21875152281951944102#52037#52040regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS2_famchange name
max_block_length20
max_score268
user_loginjncldwll1
lower_limit0
date2013-07-23 00:00:00
casesJC101,JC104,JC126,JC132,JC134,JC136,JC147,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores