Genome-wide homozygosity in CFS2 - CFS2_fam

max homozygosity score: 186
41630 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
18674871143749208360#51957#51973regiongenotypes
1653118563902119456949#42578#42615regiongenotypes
16542081882222079632#44608#44641regiongenotypes
16442755086828333817#44771#44788regiongenotypes
16242608268927117580#44741#44762regiongenotypes
15945776512358474633#45530#45539regiongenotypes
1572082435978533612#27657#27668regiongenotypes
15033426786035084304#40452#40475regiongenotypes
15041539299316588125#44476#44502regiongenotypes
15075085575851944102#52018#52040regiongenotypes
15089173788992009379#3371#3379regiongenotypes
14934494487745228417#40691#40701regiongenotypes
narrow - use this when all patients are in the same family
18674871143749208360#51957#51973regiongenotypes
1653118563902119456949#42578#42615regiongenotypes
16542081882221752975#44608#44633regiongenotypes
16442755086828333817#44771#44788regiongenotypes
16242608268927117580#44741#44762regiongenotypes
15945776512358474633#45530#45539regiongenotypes
1572082435978533612#27657#27668regiongenotypes
15033426786035084304#40452#40475regiongenotypes
15041539299316588125#44476#44502regiongenotypes
15042171109722079632#44632#44641regiongenotypes
15075085575851944102#52018#52040regiongenotypes
15089173788992009379#3371#3379regiongenotypes
14934494487745228417#40691#40701regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS2_famchange name
max_block_length15
max_score186
user_loginjncldwll1
lower_limit3
date2013-08-08 00:00:00
casesJC104,JC132,JC134,JC136,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores