Homozygosity on chromosome 4 in CFS2 - CFS2_fam

max homozygosity score: 186
 9 markers
57765123 bp chromosome 4 58474633 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
15945776512358474633#45530#45539regiongenotypes
narrow - use this when all patients are in the same family
15945776512358474633#45530#45539regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS2_famchange name
max_block_length15
max_score186
user_loginjncldwll1
lower_limit3
date2013-08-08 00:00:00
casesJC104,JC132,JC134,JC136,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores