Genome-wide homozygosity in CFS2 - CFS2_fam_copy

max homozygosity score: 146
41630 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
146185135790451619087#21958#21961regiongenotypes
145185171771451863867#21967#21971regiongenotypes
13175266783852677405#52059#52061regiongenotypes
12875246799452613950#52046#52050regiongenotypes
12675267740552739317#52061#2regiongenotypes
125272177875321782827#37209#37212regiongenotypes
12375273945553032339#3#5regiongenotypes
118224174059541808007#31748#31752regiongenotypes
narrow - use this when all patients are in the same family
146185135790451619087#21958#21961regiongenotypes
145185171771451863867#21967#21971regiongenotypes
13175266783852677405#52059#52061regiongenotypes
12875246799452613950#52046#52050regiongenotypes
12675267740552739317#52061#2regiongenotypes
125272177875321782827#37209#37212regiongenotypes
12375273945553032339#3#5regiongenotypes
118224174059541808007#31748#31752regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS2_fam_copychange name
max_block_length15
max_score146
allele_frequenciescontrols
user_loginjncldwll1
homogeneity_requiredhomogeneity required
lower_limit0
date2016-03-05 00:00:00
exclusion_length250
casesJC101,JC104,JC126,JC132,JC134,JC136,JC147,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores