Homozygosity on chromosome 7 in CFS2 - CFS2_fam_copy

max homozygosity score: 146
3 markers
52667838 bp chromosome 7 52677405 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
13175266783852677405#52059#52061regiongenotypes
narrow - use this when all patients are in the same family
13175266783852677405#52059#52061regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS2_fam_copychange name
max_block_length15
max_score146
allele_frequenciescontrols
user_loginjncldwll1
homogeneity_requiredhomogeneity required
lower_limit0
date2016-03-05 00:00:00
exclusion_length250
casesJC101,JC104,JC126,JC132,JC134,JC136,JC147,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores