Homozygosity on chromosome 18 in CFS2 - CFS_fam3

max homozygosity score: 223
 4 markers
57125689 bp chromosome 18 57299129 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
179185712568957299129#22106#22109regiongenotypes
narrow - use this when all patients are in the same family
179185712568957299129#22106#22109regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS_fam3change name
max_block_length15
max_score223
user_loginjncldwll1
lower_limit0
date2013-10-08 00:00:00
casesJC101,JC104,JC126,JC132,JC134,JC136,JC147,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC61,JC69,JC70
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores