Homozygosity on chromosome 3 in CFS2 - CFS2_fam

max homozygosity score: 197
 33 markers
118563902 bp chromosome 3 119456949 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
1653118563902119456949#42578#42615regiongenotypes
narrow - use this when all patients are in the same family
1653118563902119456949#42578#42615regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS2_famchange name
max_block_length15
max_score197
user_loginjncldwll1
lower_limit0
date2013-08-08 00:00:00
casesJC101,JC104,JC132,JC134,JC136,JC147,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC69
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores