Homozygosity on chromosome 4 in CFS2 - CFS2_fam

max homozygosity score: 197
13 markers
15392993 bp chromosome 4 16588125 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
16541539299316588125#44476#44502regiongenotypes
narrow - use this when all patients are in the same family
16541539299316588125#44476#44502regiongenotypes

change threshold

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameCFS2change name
analysis_nameCFS2_famchange name
max_block_length15
max_score197
user_loginjncldwll1
lower_limit0
date2013-08-08 00:00:00
casesJC101,JC104,JC132,JC134,JC136,JC147,JC158,JC160,JC162,JC164,JC166,JC168,JC170,JC172,JC69
controlsJC252,JC254,JC256,JC258,JC261,JC267,JC269,JC271,JC273


retrieve homozyosity scores