Genome-wide homozygosity in Example CS - standard analysis

max homozygosity score: 320
61001 markers
Click on a chromosome to zoom in. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
32065380897965533066rs7766181rs10498828regiongenotypes
266113775839339735014rs1515038rs769818regiongenotypes
2582194591485195643802rs1011079rs801340regiongenotypes
narrow - use this when all patients are in the same family
32065380897965533066rs7766181rs10498828regiongenotypes
266113775839339735014rs1515038rs769818regiongenotypes
2582194591485195643802rs1011079rs801340regiongenotypes

change threshold

call GeneDistiller build 37 with all regions at once

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
 
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameExample CSchange name
analysis_namestandard analysischange name
analysis_descriptionPubMed
max_block_length80
max_score320
allele_frequenciescontrols
user_loginexamples
cases3541,3589,3593,3624
controls3538,3539,3540,3542,3592


retrieve homozyosity scores
new & highly experimental: show this for build 36