Homozygosity on chromosome 11 in Example CS - standard analysis

max homozygosity score: 320
 42 markers
37758393 bp chromosome 11 39735014 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
266113775839339735014rs1515038rs769818regiongenotypes
narrow - use this when all patients are in the same family
266113775839339735014rs1515038rs769818regiongenotypes

change threshold

call GeneDistiller build 37 with all regions at once

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameExample CSchange name
analysis_namestandard analysischange name
analysis_descriptionPubMed
max_block_length80
max_score320
allele_frequenciescontrols
user_loginexamples
cases3541,3589,3593,3624
controls3538,3539,3540,3542,3592


retrieve homozyosity scores
new & highly experimental: show this for build 36