Homozygosity on chromosome 15 in Tutorial_VCF - 1 individual affected

max homozygosity score: 434
 744 markers
37954602 bp chromosome 15 40030968 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
434153795460240030968n/an/aregiongenotypes
narrow - use this when all patients are in the same family
434153795460240030968n/an/aregiongenotypes

change threshold

call GeneDistiller build 37 with all regions at once

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameTutorial_VCFchange name
analysis_name1 individual affectedchange name
max_block_length250
max_score434
user_logintutorial
vcf_build37
lower_limit0
date2012-04-27 00:00:00
casesSample1,Sample2
controlsSample3,Sample4


retrieve homozyosity scores
new & highly experimental: show this for build 36