Homozygosity on chromosome 7 in Tutorial - tutorial

max homozygosity score: 400
 3 markers
29835020 bp chromosome 7 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
32172983502029885944rs6971564rs174941regiongenotypes
narrow - use this when all patients are in the same family
32172983502029885944rs6971564rs174941regiongenotypes
32072988551829885944rs10488081rs174941regiongenotypes

change threshold

call GeneDistiller build 37 with all regions at once

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameTutorialchange name
analysis_nametutorialchange name
max_block_length80
max_score400
allele_frequenciescontrols
user_logintutorial
casesNA06993,NA07019,NA07034,NA07056,NA07357
controlsNA10835,NA10846,NA10854


retrieve homozyosity scores
new & highly experimental: show this for build 36