Homozygosity on chromosome 7 in Tutorial - tutorial

max homozygosity score: 400
 159 markers
29944869 bp chromosome 7 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
40072994486936342587rs10488082rs196628regiongenotypes
narrow - use this when all patients are in the same family
40072994486936342587rs10488082rs196628regiongenotypes
32073633896736342587rs2241142rs196628regiongenotypes

change threshold

call GeneDistiller build 37 with all regions at once

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameTutorialchange name
analysis_nametutorialchange name
max_block_length80
max_score400
allele_frequenciescontrols
user_logintutorial
casesNA06993,NA07019,NA07034,NA07056,NA07357
controlsNA10835,NA10846,NA10854


retrieve homozyosity scores
new & highly experimental: show this for build 36