Homozygosity on chromosome 7 in Tutorial - tutorial

max homozygosity score: 400
 4 markers
36342587 bp chromosome 7 36547689 bp
You can define a region in which you like to zoom in or inspect the genotypes by clicking on the left and right limits of it in the plot. help                tutorial
scorechrfrom (bp)to (bp)from SNPto SNPbuild 37
broad - use this when you expect some genetic heterogeneity
32573634258736547689rs196628rs3911827regiongenotypes
narrow - use this when all patients are in the same family
32573634258736547689rs196628rs3911827regiongenotypes

change threshold

call GeneDistiller build 37 with all regions at once

create files for Alohomora
flanking region [bp]

create a BED file build 37
complete homozygous regions shown here
  
complete genes within these only exons flanked by bases on each side.

analysis settings
project_nameTutorialchange name
analysis_nametutorialchange name
max_block_length80
max_score400
allele_frequenciescontrols
user_logintutorial
casesNA06993,NA07019,NA07034,NA07056,NA07357
controlsNA10835,NA10846,NA10854


retrieve homozyosity scores
new & highly experimental: show this for build 36